Chinese Journal of Pharmacovigilance ›› 2025, Vol. 22 ›› Issue (10): 1177-1182.
DOI: 10.19803/j.1672-8629.20250615

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Characterization of Higher-Order Structures in Protein Pharmaceuticals: a Study of Methods and Advances

MENG Hexin1,2, WANG Yue2△, LIU Youping1#, LIU Bo2,*   

  1. 1School of Pharmacy, Shenyang Pharmaceutical University, Shengyang Liaoning 110016, China;
    2Chemical Drug Control Institute of National Institutes for Food and Drug Control, Beijing 102629, China
  • Received:2025-09-02 Online:2025-10-15 Published:2025-10-20

Abstract: Objective To summarize the recent advancements in methods used to characterize the higher-order structures of protein drugs in order to address the challenges to quality control and to provide references for structural analysis of related drugs. Methods By reviewing related literature, the principles and applications of and limitations to mass spectrometry, cryo-electron microscopy, and artificial intelligence prediction in the characterization of protein drug higher-order structures were synthesized. Results There were distinct advantages to different characterization techniques in terms of resolution, throughput, and dynamic information capture. Mass spectrometry excelled in analyzing conformational dynamics, cryo-electron microscopy provided near-atomic-level static structures, while the integration of multiple techniques and computational modeling significantly improved the integrity and reliability of structural information about complex protein systems. Conclusion Despite the progress that has been made in protein drug structure research, currently-used analytical methods are far from perfect. More research and the development of new methods are required to achieve more precise structural analysis, which are expected to provide technical support for the development and quality control of biological drugs.

Key words: Protein Therapeutics, Higher-Order Structure, Cryo-Electron Microscopy, Hydrogen-Deuterium Exchange Mass Spectrometry, AlphaFold

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